Transcript: TAPT1-AS1:8

Basic information

LNCipedia transcript ID: TAPT1-AS1:8 
LNCipedia gene ID: TAPT1-AS1
Location (hg38): chr4:16288481-16301389
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008002; NONHSAT095683
Alternative gene names: XLOC_003468; linc-CLRN2-4; FLJ39653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.0914 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TAPT1-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD38-2:1
3.1 lnc-CD38-2:5
4.0 TAPT1-AS1:8
4.1 TAPT1-AS1:8
5.0 TAPT1-AS1:8
5.1 TAPT1-AS1:8
5.2 TAPT1-AS1:8