Transcript: TAPT1-AS1:9

Basic information

LNCipedia transcript ID: TAPT1-AS1:9 
LNCipedia gene ID: TAPT1-AS1
Location (hg38): chr4:16320098-16355742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT095684; FPKM1_group_23021_transcript_1
Alternative gene names: FLJ39653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.3288 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TAPT1-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD38-2:10
4.0 TAPT1-AS1:9
4.1 TAPT1-AS1:9
5.0 TAPT1-AS1:9
5.1 TAPT1-AS1:9
5.2 TAPT1-AS1:9