Transcript: TARID:1

Basic information

LNCipedia transcript ID: TARID:1 
LNCipedia gene ID: TARID
Location (hg38): chr6:133887570-133930710
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3262_chr6:134208707-134251848_placenta
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5167 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:1 yes no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A12-2:2
4.0 TARID:1
4.1 TARID:1
5.0 TARID:1
5.1 TARID:1
5.2 TARID:1