Transcript: TARID:10

Basic information

LNCipedia transcript ID: TARID:10 
HGNC Gene Symbol: TARID    
HGNC Full Gene Name: TCF21 antisense RNA inducing promoter demethylation
Ensembl Gene ID: ENSG00000227954
Ensembl Transcript ID: ENST00000607033
Location (hg38): chr6:133502252-133888982
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2960 bp
Exons: 9
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT114996; ENST00000607033.1; ENST00000607033.5
Alternative gene names: ENSG00000227954.2; RP3-323P13.2; ENSG00000227954.6; TARID;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.8298 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:10 yes no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A12-2:7
4.0 TARID:10
4.1 TARID:10
5.0 TARID:10
5.1 TARID:10
5.2 TARID:10