Transcript: TARID:13

Basic information

LNCipedia transcript ID: TARID:13 
HGNC Gene Symbol: TARID    
HGNC Full Gene Name: TCF21 antisense RNA inducing promoter demethylation
Ensembl Gene ID: ENSG00000227954
Ensembl Transcript ID: ENST00000419627
Location (hg38): chr6:133760185-133845951
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 244 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419627; ENST00000419627.1; RP3-323P13.2-001; OTTHUMT00000042291.1; NONHSAT147432
Alternative gene names: ENSG00000234554; RP3-323P13.2; ENSG00000234554.1; OTTHUMG00000015607.1; ENSG00000227954.2; ENSG00000227954.6; TARID;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -457.77 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:13 no no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC2A12-1:1
3.1 lnc-SLC2A12-1:1
4.0 TARID:13
4.1 TARID:13
5.0 TARID:13
5.1 TARID:13
5.2 TARID:13