Transcript: TARID:14

Basic information

LNCipedia transcript ID: TARID:14 
HGNC Gene Symbol: TARID    
HGNC Full Gene Name: TCF21 antisense RNA inducing promoter demethylation
Ensembl Gene ID: ENSG00000227954
Ensembl Transcript ID: ENST00000606292
Location (hg38): chr6:133537174-133767608
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606292.1; ENST00000606292.5
Alternative gene names: ENSG00000227954.2; RP3-323P13.2; ENSG00000227954.6; TARID;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -377.1751 non-coding 
CPAT coding probability 11.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:14 no no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A12-2:9
4.0 TARID:14
4.1 TARID:14
5.0 TARID:14
5.1 TARID:14
5.2 TARID:14

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