Transcript: TARID:8

Basic information

LNCipedia transcript ID: TARID:8 
LNCipedia gene ID: TARID
RefSeq ID: NR_109982
Location (hg38): chr6:133502252-133889006
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2984 bp
Exons: 9
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109982; NR_109982.1
Alternative gene names: ; TARID


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.8298 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:8 yes no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A12-2:5
4.0 TARID:8
4.1 TARID:8
5.0 TARID:8
5.1 TARID:8
5.2 TARID:8