Transcript: TARID:9

Basic information

LNCipedia transcript ID: TARID:9 
LNCipedia gene ID: TARID
Location (hg38): chr6:133887511-133889006
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 565 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000607641.1
Alternative gene names: ENSG00000227954.2; RP3-323P13.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -367.0504 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TARID:9 no no no no

Available literature

  1. Arab (2014), Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A12-2:4
4.0 TARID:9
4.1 TARID:9
5.0 TARID:9
5.1 TARID:9
5.2 TARID:9