Transcript: TBC1D8-AS1:9

Basic information

LNCipedia transcript ID: TBC1D8-AS1:9 
LNCipedia gene ID: TBC1D8-AS1
Location (hg38): chr2:101151660-101155410
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2476 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000500257; TCONS_00002716; NONHSAT072811; ENST00000610202.1
Alternative gene names: ENSG00000246943; XLOC_001592; linc-C2orf29; AC013722.2; ENSG00000272902.1; RP11-299H21.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.9743 non-coding 
CPAT coding probability 14.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBC1D8-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf29-1:1
3.1 lnc-C2orf29-1:1
4.0 lnc-C2orf29-1:1
4.1 lnc-C2orf29-1:1
5.0 lnc-C2orf29-1:1
5.1 TBC1D8-AS1:4
5.2 TBC1D8-AS1:9