Transcript: TBX18-AS1:15

Basic information

LNCipedia transcript ID: TBX18-AS1:15 
LNCipedia gene ID: TBX18-AS1
Location (hg38): chr6:84689505-84709534
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 377 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000423086.1; RP11-132M7.3-001; OTTHUMT00000041376.1; NONHSAT113826
Alternative gene names: ENSG00000228290.1; RP11-132M7.3; OTTHUMG00000015128.1; ENSG00000228290.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.1024 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX18-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRAP2-3:1
4.0 TBX18-AS1:15
4.1 TBX18-AS1:15
5.0 TBX18-AS1:15
5.1 TBX18-AS1:15
5.2 TBX18-AS1:15