Transcript: TBX2-AS1:3

Basic information

LNCipedia transcript ID: TBX2-AS1:3 
LNCipedia gene ID: TBX2-AS1
Ensembl Gene ID: ENSG00000267131
Ensembl Transcript ID: ENST00000585765
Location (hg38): chr17:61361668-61400243
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 470 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055117; ENST00000585765.1
Alternative gene names: ENSG00000267131.1; RP11-332H18.5; ; AC005746.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -286.2916 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX2-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NACA2-5:1
4.0 TBX2-AS1:3
4.1 TBX2-AS1:3
5.0 TBX2-AS1:3
5.1 TBX2-AS1:3
5.2 TBX2-AS1:3