Transcript: TBX5-AS1:1

Basic information

LNCipedia transcript ID: TBX5-AS1:1 
HGNC Gene Symbol: TBX5-AS1    
HGNC Full Gene Name: TBX5 antisense RNA 1
Ensembl Gene ID: ENSG00000255399
Ensembl Transcript ID: ENST00000531202
Location (hg38): chr12:114408191-114410012
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 822 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531202.1; RP11-385N17.1-002; OTTHUMT00000388291.1
Alternative gene names: ENSG00000255399.1; RP11-385N17.1; OTTHUMG00000166190.1; ENSG00000255399.2; TBX5-AS1; ENSG00000255399.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.7646 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX5-AS1:1 no no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-116D17.1.1-13:1
4.0 TBX5-AS1:1
4.1 TBX5-AS1:1
5.0 TBX5-AS1:1
5.1 TBX5-AS1:1
5.2 TBX5-AS1:1