Transcript: TBX5-AS1:2

Basic information

LNCipedia transcript ID: TBX5-AS1:2 
LNCipedia gene ID: TBX5-AS1
RefSeq ID: NR_038440
Location (hg38): chr12:114408195-114412832
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3638 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT030877; NR_038440; NR_038440.1
Alternative gene names: ; TBX5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0101 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX5-AS1:2 no no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-116D17.1.1-13:5
4.0 TBX5-AS1:2
4.1 TBX5-AS1:2
5.0 TBX5-AS1:2
5.1 TBX5-AS1:2
5.2 TBX5-AS1:2