Transcript: TBX5-AS1:5

Basic information

LNCipedia transcript ID: TBX5-AS1:5 
HGNC Gene Symbol: TBX5-AS1    
HGNC Full Gene Name: TBX5 antisense RNA 1
Ensembl Gene ID: ENSG00000255399
Ensembl Transcript ID: ENST00000528549
Location (hg38): chr12:114408754-114412831
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3620 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528549.1; RP11-385N17.1-001; OTTHUMT00000388294.1; NONHSAT030879
Alternative gene names: ENSG00000255399.1; RP11-385N17.1; OTTHUMG00000166190.1; ENSG00000255399.2; TBX5-AS1; ENSG00000255399.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0101 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX5-AS1:5 no no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-116D17.1.1-13:4
4.0 TBX5-AS1:5
4.1 TBX5-AS1:5
5.0 TBX5-AS1:5
5.1 TBX5-AS1:5
5.2 TBX5-AS1:5