Transcript: TCL6:1

Basic information

LNCipedia transcript ID: TCL6:1 
LNCipedia gene ID: TCL6
Ensembl Gene ID: ENSG00000258927
Ensembl Transcript ID: ENST00000555032
Location (hg38): chr14:95620914-95643285
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1714 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555032; ENST00000555032.1; RP11-1070N10.5-001; OTTHUMT00000414557.1; NONHSAT039464
Alternative gene names: ENSG00000258927; RP11-1070N10.5; ENSG00000258927.1; OTTHUMG00000171639.1; TCL6e1; TNG2; TNG1; AL133467.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.9925 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TCL6:1 no no no no

Available literature

  1. Saitou (2000), Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia., Oncogene
  2. Hallas (1999), Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCL1B-2:1
3.1 lnc-TCL1B-3:1
4.0 TCL6:1
4.1 TCL6:1
5.0 TCL6:1
5.1 TCL6:1
5.2 TCL6:1