Transcript: TCL6:2

Basic information

LNCipedia transcript ID: TCL6:2 
LNCipedia gene ID: TCL6
Location (hg38): chr14:95621004-95652135
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT039465
Alternative gene names: TCL6e1; TNG2; TNG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.2902 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TCL6:2 no no no no

Available literature

  1. Saitou (2000), Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia., Oncogene
  2. Hallas (1999), Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCL1B-3:3
4.0 TCL6:2
4.1 TCL6:2
5.0 TCL6:2
5.1 TCL6:2
5.2 TCL6:2