Transcript: TCL6:20

Basic information

LNCipedia transcript ID: TCL6:20 
LNCipedia gene ID: TCL6
Location (hg38): chr14:95664101-95670388
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3239 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT039483
Alternative gene names: TCL6e1; TNG2; TNG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.494 non-coding 
CPAT coding probability 59.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TCL6:20 no no no no

Available literature

  1. Saitou (2000), Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia., Oncogene
  2. Hallas (1999), Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCL1B-3:8
4.0 TCL6:20
4.1 TCL6:20
5.0 TCL6:20
5.1 TCL6:20
5.2 TCL6:20