Transcript: TCL6:3

Basic information

LNCipedia transcript ID: TCL6:3 
LNCipedia gene ID: TCL6
Location (hg38): chr14:95641488-95642518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 884 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022616; NONHSAT039466
Alternative gene names: XLOC_010918; linc-TCL1B-1; TCL6e1; TNG2; TNG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.2924 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TCL6:3 no no no no

Available literature

  1. Saitou (2000), Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia., Oncogene
  2. Hallas (1999), Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCL1B-2:2
3.1 lnc-TCL1B-3:2
4.0 TCL6:3
4.1 TCL6:3
5.0 TCL6:3
5.1 TCL6:3
5.2 TCL6:3