Transcript: TDRKH-AS1:16

Basic information

LNCipedia transcript ID: TDRKH-AS1:16 
LNCipedia gene ID: TDRKH-AS1
Location (hg38): chr1:151790834-151794402
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1000 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000203288.3|ENST00000389897.3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -68.0266 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TDRKH-AS1:16 yes no no no

Available literature

  1. Li (2016), Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-OAZ3-1:6
5.0 lnc-OAZ3-1:6
5.1 TDRKH-AS1:4
5.2 TDRKH-AS1:16