Transcript: TDRKH-AS1:19

Basic information

LNCipedia transcript ID: TDRKH-AS1:19 
LNCipedia gene ID: TDRKH-AS1
Location (hg38): chr1:151790834-151805704
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5385 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000203288.3|MICT00000020976.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.777 non-coding 
CPAT coding probability 28.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TDRKH-AS1:19 no no no no

Available literature

  1. Li (2016), Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-OAZ3-1:9
5.0 lnc-OAZ3-1:9
5.1 TDRKH-AS1:7
5.2 TDRKH-AS1:19