Transcript: TET2-AS1:2

Basic information

LNCipedia transcript ID: TET2-AS1:2 
HGNC Gene Symbol: TET2-AS1    
HGNC Full Gene Name: TET2 antisense RNA 1
Ensembl Gene ID: ENSG00000251586
Ensembl Transcript ID: ENST00000515414
Location (hg38): chr4:105171354-105178063
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 537 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515414.1; TET2-AS1-001; OTTHUMT00000363316.1; NONHSAT097668
Alternative gene names: ENSG00000251586.1; TET2-AS1; OTTHUMG00000160996.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.5174 non-coding 
CPAT coding probability 18.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TET2-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPA2-3:1
4.0 TET2-AS1:2
4.1 TET2-AS1:2
5.0 TET2-AS1:2
5.1 TET2-AS1:2
5.2 TET2-AS1:2