Transcript: TGFB2-AS1:2

Basic information

LNCipedia transcript ID: TGFB2-AS1:2 
HGNC Gene Symbol: TGFB2-AS1    
HGNC Full Gene Name: TGFB2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000232480
Ensembl Transcript ID: ENST00000414452
RefSeq ID: NR_046268
Location (hg38): chr1:218344196-218345678
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 557 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414452.1; RP11-224O19.2-001; OTTHUMT00000095358.1; NONHSAT009517; NR_046268; NR_046268.1
Alternative gene names: ENSG00000232480.1; RP11-224O19.2; OTTHUMG00000039520.1; TGFB2-AS1; ; NR_046268


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.5618 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TGFB2-AS1:2 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPATCH2-2:1
4.0 TGFB2-AS1:2
4.1 TGFB2-AS1:2
5.0 TGFB2-AS1:2
5.1 TGFB2-AS1:2
5.2 TGFB2-AS1:2