Transcript: TGFB2-OT1:2

Basic information

LNCipedia transcript ID: TGFB2-OT1:2 
HGNC Gene Symbol: TGFB2-OT1    
HGNC Full Gene Name: TGFB2 overlapping transcript 1
Ensembl Gene ID: ENSG00000281453
Ensembl Transcript ID: ENST00000625474
Location (hg38): chr1:218442626-218443996
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1371 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625474.1
Alternative gene names: ENSG00000281453.1; TGFB2-OT1; FLJ11812


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.9764 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TGFB2-OT1:2 yes no no no

Available literature

  1. Lu (2015), A 3'UTR-associated RNA, FLJ11812 maintains stemness of human embryonic stem cells by targeting miR-4459., Stem Cells Dev.
  2. Ge (2014), Identification of a novel MTOR activator and discovery of a competing endogenous RNA regulating autophagy in vascular endothelial cells., Autophagy


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TGFB2-OT1:2
4.1 TGFB2-OT1:2
5.0 TGFB2-OT1:2
5.1 TGFB2-OT1:2
5.2 TGFB2-OT1:2