Transcript: THAP9-AS1:1

Basic information

LNCipedia transcript ID: THAP9-AS1:1 
LNCipedia gene ID: THAP9-AS1
Location (hg38): chr4:82893486-82900960
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2293 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000504520.1; RP11-163O17.1-001; OTTHUMT00000361931.1; NONHSAT097187
Alternative gene names: ENSG00000251022.1; RP11-163O17.1; OTTHUMG00000160729.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8155 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.584826288
covF1Prop0.12
seqAAMRSREAGPKLRRIQEPANGSPGAVSETGGYREERLSDAEIMGKLLAWLAVGM

In stringent set: no

Locus conservation

Locus conservation?
THAP9-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN54-1:1
4.0 THAP9-AS1:1
4.1 THAP9-AS1:1
5.0 THAP9-AS1:1
5.1 THAP9-AS1:1
5.2 THAP9-AS1:1