Transcript: THAP9-AS1:17

Basic information

LNCipedia transcript ID: THAP9-AS1:17 
LNCipedia gene ID: THAP9-AS1
Location (hg38): chr4:82893537-82900508
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2585 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000504792.1; RP11-163O17.1-002; OTTHUMT00000361932.1; NONHSAT097188
Alternative gene names: ENSG00000251022.1; RP11-163O17.1; OTTHUMG00000160729.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8155 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.12
seqAAMRSREAGPKLRRIQEPANGSPGAVSETGGYREERLSDAEIMGKLLAWLAVGM
orfFrame6.584826288

In stringent set: no

Locus conservation

Locus conservation?
THAP9-AS1:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN54-1:11
4.0 THAP9-AS1:17
4.1 THAP9-AS1:17
5.0 THAP9-AS1:17
5.1 THAP9-AS1:17
5.2 THAP9-AS1:17