Transcript: THAP9-AS1:18

Basic information

LNCipedia transcript ID: THAP9-AS1:18 
HGNC Gene Symbol: THAP9-AS1    
HGNC Full Gene Name: THAP9 antisense RNA 1
Ensembl Gene ID: ENSG00000251022
Ensembl Transcript ID: ENST00000504792
Location (hg38): chr4:82893545-82900508
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2577 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504792.2; ENST00000504792.6
Alternative gene names: ENSG00000251022.2; THAP9-AS1; ENSG00000251022.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8155 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.12
seqAAMRSREAGPKLRRIQEPANGSPGAVSETGGYREERLSDAEIMGKLLAWLAVGM
orfFrame6.584826288

In stringent set: no

Locus conservation

Locus conservation?
THAP9-AS1:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN54-1:19
4.0 THAP9-AS1:18
4.1 THAP9-AS1:18
5.0 THAP9-AS1:18
5.1 THAP9-AS1:18
5.2 THAP9-AS1:18