Transcript: THRIL:3

Basic information

LNCipedia transcript ID: THRIL:3 
HGNC Gene Symbol: THRIL    
HGNC Full Gene Name: TNF and HNRNPL related immunoregulatory long non-coding RNA
Ensembl Gene ID: ENSG00000280634
Ensembl Transcript ID: ENST00000627370
Location (hg38): chr12:125025434-125027410
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1977 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627370.1
Alternative gene names: ENSG00000280634.1; THRIL; Linc1992; TCONS_00020260; BRI3BP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.9041 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THRIL:3 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.
  2. Li (2014), The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 THRIL:3
4.1 THRIL:3
5.0 THRIL:3
5.1 THRIL:3
5.2 THRIL:3