Transcript: TIPARP-AS1:2

Basic information

LNCipedia transcript ID: TIPARP-AS1:2 
LNCipedia gene ID: TIPARP-AS1
RefSeq ID: NR_027954
Location (hg38): chr3:156673171-156675713
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2543 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT092861; NR_027954; NR_027954.1
Alternative gene names: ; TIPARP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0593 non-coding 
CPAT coding probability 5.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TIPARP-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSR3-2:5
4.0 TIPARP-AS1:2
4.1 TIPARP-AS1:2
5.0 TIPARP-AS1:2
5.1 TIPARP-AS1:2
5.2 TIPARP-AS1:2