Transcript: TIPARP-AS1:4

Basic information

LNCipedia transcript ID: TIPARP-AS1:4 
HGNC Gene Symbol: TIPARP-AS1    
HGNC Full Gene Name: TIPARP antisense RNA 1
Ensembl Gene ID: ENSG00000243926
Ensembl Transcript ID: ENST00000492937
Location (hg38): chr3:156671862-156674378
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 441 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000492937.1; TIPARP-AS1-001; OTTHUMT00000351611.1
Alternative gene names: ENSG00000243926.1; TIPARP-AS1; OTTHUMG00000158643.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.348 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TIPARP-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSR3-2:1
4.0 TIPARP-AS1:4
4.1 TIPARP-AS1:4
5.0 TIPARP-AS1:4
5.1 TIPARP-AS1:4
5.2 TIPARP-AS1:4