Transcript: TLX1NB:2

Basic information

LNCipedia transcript ID: TLX1NB:2 
HGNC Gene Symbol: TLX1NB    
HGNC Full Gene Name: TLX1 neighbor
Ensembl Gene ID: ENSG00000236311
Ensembl Transcript ID: ENST00000425505
Location (hg38): chr10:101090308-101131126
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 904 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425505; ENST00000425505.1; RP11-108L7.11-002; OTTHUMT00000049926.1; NONHSAT016012
Alternative gene names: ENSG00000236311; RP11-108L7.11; ENSG00000236311.1; OTTHUMG00000018925.3; ENSG00000236311.6; TLX1NB; TD1; TDI; APT-B7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.001 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TLX1NB:2 yes no no no

Available literature

  1. Greene (2007), A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZD7-2:2
3.1 lnc-PDZD7-4:2
4.0 TLX1NB:2
4.1 TLX1NB:2
5.0 TLX1NB:2
5.1 TLX1NB:2
5.2 TLX1NB:2