Transcript: TLX1NB:5

Basic information

LNCipedia transcript ID: TLX1NB:5 
LNCipedia gene ID: TLX1NB
RefSeq ID: NR_130724
Location (hg38): chr10:101114700-101141266
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1259 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_130724.1
Alternative gene names: TLX1NB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -298.0548 non-coding 
CPAT coding probability 27.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TLX1NB:5 yes no no no

Available literature

  1. Greene (2007), A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 TLX1NB:5
5.1 TLX1NB:5
5.2 TLX1NB:5