Transcript: TMCC1-AS1:6

Basic information

LNCipedia transcript ID: TMCC1-AS1:6 
HGNC Gene Symbol: TMCC1-AS1    
HGNC Full Gene Name: TMCC1 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000271270
Ensembl Transcript ID: ENST00000604747
Location (hg38): chr3:129901851-129918575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT092083; ENST00000604747.1
Alternative gene names: ENSG00000271270.1; TMCC1-AS1; ENSG00000271270.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 54.2268 non-coding 
CPAT coding probability 57.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TMCC1-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRH-6:6
4.0 TMCC1-AS1:6
4.1 TMCC1-AS1:6
5.0 TMCC1-AS1:6
5.1 TMCC1-AS1:6
5.2 TMCC1-AS1:6