Transcript: TMEM246-AS1:12

Basic information

LNCipedia transcript ID: TMEM246-AS1:12 
HGNC Gene Symbol: TMEM246-AS1    
HGNC Full Gene Name: TMEM246 antisense RNA 1
Ensembl Gene ID: ENSG00000225376
Ensembl Transcript ID: ENST00000425734
Location (hg38): chr9:101469379-101481502
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425734.1; RP11-490D19.6-001; OTTHUMT00000053438.1
Alternative gene names: ENSG00000225376.1; RP11-490D19.6; OTTHUMG00000020380.1; ENSG00000225376.5; TMEM246-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.7566 non-coding 
CPAT coding probability 22.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM246-AS1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF20-1:4
4.0 TMEM246-AS1:12
4.1 TMEM246-AS1:12
5.0 TMEM246-AS1:12
5.1 TMEM246-AS1:12
5.2 TMEM246-AS1:12