Transcript: TMEM72-AS1:19

Basic information

LNCipedia transcript ID: TMEM72-AS1:19 
LNCipedia gene ID: TMEM72-AS1
Ensembl Gene ID: ENSG00000234504
Ensembl Transcript ID: ENST00000436877
Location (hg38): chr10:44899614-44920220
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1444 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436877.2
Alternative gene names: ENSG00000234504.2; RP11-285G1.2; ; AL353801.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.8343 non-coding 
CPAT coding probability 33.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM72-AS1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf10-1:2
4.0 lnc-C10orf10-1:2
4.1 TMEM72-AS1:19
5.0 TMEM72-AS1:19
5.1 TMEM72-AS1:19
5.2 TMEM72-AS1:19