Transcript: TMEM92-AS1:2

Basic information

LNCipedia transcript ID: TMEM92-AS1:2 
HGNC Gene Symbol: TMEM92-AS1    
HGNC Full Gene Name: TMEM92 antisense RNA 1
Ensembl Gene ID: ENSG00000251179
Ensembl Transcript ID: ENST00000508851
Location (hg38): chr17:50281577-50287855
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 750 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025237; ENST00000508851.1; RP11-893F2.9-001; OTTHUMT00000367051.1; NONHSAT054630
Alternative gene names: XLOC_012515; linc-COL1A1-2; ENSG00000251179.1; RP11-893F2.9; OTTHUMG00000162058.1; TMEM92-AS1; lncRNA-508851; TCONS_00025237


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.416 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM92-AS1:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Yuan (2014), A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma., Cancer Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL1A1-2:2
3.1 lnc-COL1A1-4:2
4.0 TMEM92-AS1:2
4.1 TMEM92-AS1:2
5.0 TMEM92-AS1:2
5.1 TMEM92-AS1:2
5.2 TMEM92-AS1:2