Transcript: TMEM9B-AS1:1

Basic information

LNCipedia transcript ID: TMEM9B-AS1:1 
LNCipedia gene ID: TMEM9B-AS1
Location (hg38): chr11:8964444-8978919
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 13721 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT017895
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.0365 non-coding 
CPAT coding probability 8.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TMEM9B-AS1:1 yes no no no

Available literature

  1. Amid (2001), Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKIP1-1:4
4.0 TMEM9B-AS1:1
4.1 TMEM9B-AS1:1
5.0 TMEM9B-AS1:1
5.1 TMEM9B-AS1:1
5.2 TMEM9B-AS1:1