Transcript: TMEM9B-AS1:5

Basic information

LNCipedia transcript ID: TMEM9B-AS1:5 
LNCipedia gene ID: TMEM9B-AS1
Location (hg38): chr11:8966617-8968031
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 233 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1544:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.2782 non-coding 
CPAT coding probability 9.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM9B-AS1:5 no no no no

Available literature

  1. Amid (2001), Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TMEM9B-AS1:5
4.1 TMEM9B-AS1:5
5.0 TMEM9B-AS1:5
5.1 TMEM9B-AS1:5
5.2 TMEM9B-AS1:5