Transcript: TMPO-AS1:2

Basic information

LNCipedia transcript ID: TMPO-AS1:2 
LNCipedia gene ID: TMPO-AS1
RefSeq ID: NR_027157
Location (hg38): chr12:98512973-98516226
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3161 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500515; NR_027157; NR_027157.1
Alternative gene names: ENSG00000245793; ; TMPO-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.4092 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMPO-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-181C3.1.1-2:2
3.1 lnc-RP11-181C3.1.1-2:2
4.0 TMPO-AS1:2
4.1 TMPO-AS1:2
5.0 TMPO-AS1:2
5.1 TMPO-AS1:2
5.2 TMPO-AS1:2