Transcript: TMPO-AS1:3

Basic information

LNCipedia transcript ID: TMPO-AS1:3 
HGNC Gene Symbol: TMPO-AS1    
HGNC Full Gene Name: TMPO antisense RNA 1
Ensembl Gene ID: ENSG00000257167
Ensembl Transcript ID: ENST00000546421
Location (hg38): chr12:98515294-98516210
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 738 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546421; ENST00000546421.1; RP11-181C3.2-002; OTTHUMT00000408019.1; NONHSAT030141
Alternative gene names: ENSG00000257167; RP11-181C3.2; ENSG00000257167.2; OTTHUMG00000170209.3; TMPO-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMPO-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-181C3.1.1-2:3
3.1 lnc-RP11-181C3.1.1-2:3
4.0 TMPO-AS1:3
4.1 TMPO-AS1:3
5.0 TMPO-AS1:3
5.1 TMPO-AS1:3
5.2 TMPO-AS1:3