Transcript: TNFRSF10A-AS1:3

Basic information

LNCipedia transcript ID: TNFRSF10A-AS1:3 
HGNC Gene Symbol: TNFRSF10A-AS1    
HGNC Full Gene Name: TNFRSF10A antisense RNA 1
Ensembl Gene ID: ENSG00000253930
Ensembl Transcript ID: ENST00000518308
Location (hg38): chr8:23189279-23190675
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 637 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518308.1; RP11-1149O23.2-001; OTTHUMT00000375448.1; NONHSAT125542
Alternative gene names: ENSG00000253930.1; RP11-1149O23.2; OTTHUMG00000163783.1; TNFRSF10A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.0921 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNFRSF10A-AS1:3 no no no no

Available literature

  1. Ren (2016), A Tumor-Specific Prognostic Long Non-Coding RNA Signature in Gastric Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP7-2:1
4.0 lnc-CHMP7-2:1
4.1 lnc-CHMP7-2:1
5.0 lnc-CHMP7-2:1
5.1 TNFRSF10A-AS1:2
5.2 TNFRSF10A-AS1:3