Transcript: TNFRSF14-AS1:20

Basic information

LNCipedia transcript ID: TNFRSF14-AS1:20 
LNCipedia gene ID: TNFRSF14-AS1
RefSeq ID: NR_037844
Location (hg38): chr1:2549920-2557011
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4619 bp
Exons: 7
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_037844; NR_037844.2
Alternative gene names: LOC115110


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.9052 non-coding 
CPAT coding probability 55.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TNFRSF14-AS1:20 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HES5-1:15
4.0 lnc-HES5-1:15
4.1 lnc-HES5-1:15
5.0 lnc-HES5-1:15
5.1 TNFRSF14-AS1:5
5.2 TNFRSF14-AS1:20