Transcript: TNFRSF14-AS1:23

Basic information

LNCipedia transcript ID: TNFRSF14-AS1:23 
HGNC Gene Symbol: TNFRSF14-AS1    
HGNC Full Gene Name: TNFRSF14 antisense RNA 1
Ensembl Gene ID: ENSG00000238164
Ensembl Transcript ID: ENST00000443892
Location (hg38): chr1:2549920-2554245
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443892; TCONS_00000456; ENST00000443892.2; RP3-395M20.8-006; OTTHUMT00000002189.2; NONHSAT000446
Alternative gene names: ENSG00000238164; XLOC_000678; linc-HES5-2; RP3-395M20.8; ENSG00000238164.2; OTTHUMG00000000818.3; ENSG00000238164.6; TNFRSF14-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 104.0416 coding 
CPAT coding probability 11.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TNFRSF14-AS1:23 no no no no

Available literature

  1. Zhai (2017), Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES5-1:3
3.1 lnc-HES5-1:3
4.0 lnc-HES5-1:3
4.1 lnc-HES5-1:3
5.0 lnc-HES5-1:3
5.1 TNFRSF14-AS1:8
5.2 TNFRSF14-AS1:23