Transcript: TNKS2-AS1:2

Basic information

LNCipedia transcript ID: TNKS2-AS1:2 
HGNC Gene Symbol: TNKS2-AS1    
HGNC Full Gene Name: TNKS2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000228701
Ensembl Transcript ID: ENST00000432938
RefSeq ID: NR_108071
Location (hg38): chr10:91782839-91798291
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 377 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00018023; ENST00000432938.1; RP11-251A15.4-001; OTTHUMT00000049377.1; NONHSAT015635; NR_108071; NR_108071.1
Alternative gene names: XLOC_008905; linc-PPP1R3C; ENSG00000228701.1; RP11-251A15.4; OTTHUMG00000018750.1; TNKS2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6475 non-coding 
CPAT coding probability 5.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNKS2-AS1:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFBP3-1:1
3.1 lnc-FGFBP3-1:1
4.0 TNKS2-AS1:2
4.1 TNKS2-AS1:2
5.0 TNKS2-AS1:2
5.1 TNKS2-AS1:2
5.2 TNKS2-AS1:2