Transcript: TNRC6C-AS1:3

Basic information

LNCipedia transcript ID: TNRC6C-AS1:3 
HGNC Gene Symbol: TNRC6C-AS1    
HGNC Full Gene Name: TNRC6C antisense RNA 1
Ensembl Gene ID: ENSG00000204282
Ensembl Transcript ID: ENST00000592939
Location (hg38): chr17:78107398-78110335
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2938 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT056184; ENST00000592939.1
Alternative gene names: ENSG00000204282.3; TNRC6C-AS1; ENSG00000204282.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1397 non-coding 
CPAT coding probability 16.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNRC6C-AS1:3 yes no no no

Available literature

  1. Hou (2018), LncRNA TNRC6C-AS1 regulates UNC5B in thyroid cancer to influence cell proliferation, migration, and invasion as a competing endogenous RNA of miR-129-5p., J. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC021593.1-1:4
4.0 TNRC6C-AS1:3
4.1 TNRC6C-AS1:3
5.0 TNRC6C-AS1:3
5.1 TNRC6C-AS1:3
5.2 TNRC6C-AS1:3