Transcript: TNRC6C-AS1:5

Basic information

LNCipedia transcript ID: TNRC6C-AS1:5 
LNCipedia gene ID: TNRC6C-AS1
RefSeq ID: NR_040071
Location (hg38): chr17:78107401-78111799
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3189 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040071.1
Alternative gene names: TNRC6C-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.1857 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNRC6C-AS1:5 no no no no

Available literature

  1. Hou (2018), LncRNA TNRC6C-AS1 regulates UNC5B in thyroid cancer to influence cell proliferation, migration, and invasion as a competing endogenous RNA of miR-129-5p., J. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 TNRC6C-AS1:5
5.1 TNRC6C-AS1:5
5.2 TNRC6C-AS1:5