Transcript: TOB1-AS1:2

Basic information

LNCipedia transcript ID: TOB1-AS1:2 
HGNC Gene Symbol: TOB1-AS1    
HGNC Full Gene Name: TOB1 antisense RNA 1
Ensembl Gene ID: ENSG00000229980
Ensembl Transcript ID: ENST00000416263
Location (hg38): chr17:50866679-50868307
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1351 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416263.3; AC091062.2-001; OTTHUMT00000255567.3
Alternative gene names: ENSG00000229980.4; AC091062.2; OTTHUMG00000132428.6; TOB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -437.9411 non-coding 
CPAT coding probability 15.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TOB1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WFIKKN2-1:1
4.0 TOB1-AS1:2
4.1 TOB1-AS1:2
5.0 TOB1-AS1:2
5.1 TOB1-AS1:2
5.2 TOB1-AS1:2