Transcript: TOB1-AS1:3

Basic information

LNCipedia transcript ID: TOB1-AS1:3 
LNCipedia gene ID: TOB1-AS1
RefSeq ID: NR_038458
Location (hg38): chr17:50866679-50868371
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1415 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054728; NR_038458; NR_038458.1
Alternative gene names: ; TOB1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -329.7765 non-coding 
CPAT coding probability 15.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TOB1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WFIKKN2-1:6
4.0 TOB1-AS1:3
4.1 TOB1-AS1:3
5.0 TOB1-AS1:3
5.1 TOB1-AS1:3
5.2 TOB1-AS1:3