Transcript: TOB1-AS1:5

Basic information

LNCipedia transcript ID: TOB1-AS1:5 
HGNC Gene Symbol: TOB1-AS1    
HGNC Full Gene Name: TOB1 antisense RNA 1
Ensembl Gene ID: ENSG00000229980
Ensembl Transcript ID: ENST00000523470
Location (hg38): chr17:50866759-50908923
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523470; ENST00000523470.1; AC091062.2-004; OTTHUMT00000376994.1; NONHSAT054729
Alternative gene names: ENSG00000229980; AC091062.2; ENSG00000229980.4; OTTHUMG00000132428.6; TOB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TOB1-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WFIKKN2-1:2
3.1 lnc-WFIKKN2-1:3
4.0 TOB1-AS1:5
4.1 TOB1-AS1:5
5.0 TOB1-AS1:5
5.1 TOB1-AS1:5
5.2 TOB1-AS1:5