Transcript: TOB1-AS1:8

Basic information

LNCipedia transcript ID: TOB1-AS1:8 
HGNC Gene Symbol: TOB1-AS1    
HGNC Full Gene Name: TOB1 antisense RNA 1
Ensembl Gene ID: ENSG00000229980
Ensembl Transcript ID: ENST00000519432
Location (hg38): chr17:50908678-50909417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519432; ENST00000519432.1; AC091062.2-003; OTTHUMT00000376752.1; NONHSAT054733
Alternative gene names: ENSG00000229980; AC091062.2; ENSG00000229980.4; OTTHUMG00000132428.6; TOB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.3482 non-coding 
CPAT coding probability 8.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TOB1-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WFIKKN2-1:4
3.1 lnc-WFIKKN2-1:5
4.0 TOB1-AS1:8
4.1 TOB1-AS1:8
5.0 TOB1-AS1:8
5.1 TOB1-AS1:8
5.2 TOB1-AS1:8