Transcript: TOLLIP-AS1:1

Basic information

LNCipedia transcript ID: TOLLIP-AS1:1 
LNCipedia gene ID: TOLLIP-AS1
RefSeq ID: NR_029409
Location (hg38): chr11:1309708-1310707
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1000 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_029409; NR_029409.1
Alternative gene names: ; TOLLIP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 122.7911 coding 
CPAT coding probability 14.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TOLLIP-AS1:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MUC5B-2:2
4.0 TOLLIP-AS1:1
4.1 TOLLIP-AS1:1
5.0 TOLLIP-AS1:1
5.1 TOLLIP-AS1:1
5.2 TOLLIP-AS1:1